I should remember!!(But had to look it up.) 93 tracker - Pink wire to A16 on ECM. ECM will ground the relay, which provides power to fuel pump.
Circuit Description:
When the ignition switch is turned to the "ON" position, the control module (ECM) will energize the fuel pump relay for 3 seconds, allowing for fuel pump operation. When the fuel pump relay is de-energized, the fuel pump stops operting. If the engine is sbeing cranked, or is running, the fuel pump relay will continue to operate, as long as the ECM is receiving ignition reference pulses. If the ignition reference pulses are not detected, the fuel pump will stop after 3 seconds.
But this is moot as you are not using Suzuki ECM, are You? (You must be if it runs for 3 sec.'s) If your new ECM does not have a fuel pump control, it needs a ground.
If you left Suzuki ECM in place, and want to use it, run #2 Main Relay wire to your coil B+ wire (it would be a green/white wire that went to your coil), that will signal the Suzuki ECM that motor is running. This will continue to get problematic if you want malfunction light and other dash indications to work.
Hope this helps, I would need more information to make real suggestions.