Ack - if you're happy with the way your Samurai works, by all means leave it as it is - I just know that based on over three decades wrenching on old cars, that's not the way it should work - personally - I like to be able turn the key and get rolling if & when I need to.
My point on locating the pump in the engine compartment was clearly stated in my first post - the only thing that dictates that the pump be placed low down and near the tank is the design of the particular pump chosen - both types of installation have design compromises and from my point of view, neither is inherently better.
By the way - for what it's worth - college educations are hard to come by in third world countries, seat of the pants experience however, coupled with a lot of reading, is a wonderful thing.