The (US) passenger side mount will cause problems, its about 1" out, you can cut the mount off the frame and relocate it, fab something up or buy a set of custom mounts from one of the Suzuki specialists.
If you're running a lift kit then you may get away with using the stock trac/kick oil pan. If not then you will need to use a modified Sammy pan and rework the oil pick up pipe to suit.
If you're using the auto box from the tracker then I would expect that you will need to fab up a gearbox crossmember. Its not a very common conversion.