The IFS rear axle is 5" wider then a solid axle Toyota, at 55 and 58". Unless your swapping both front and rear axles I would give trail tough a call about the cut down Toyota rear, they take 3" out of one side so the drive shafts line up properly. I'm not sure on the specifics though.
Stock samurai:
Front = 52.5" WMS to WMS
Rear = 52.2" WMS to WMS
Stock Toyota truck front axle:
55.5" wide, 29" spring perch centers, '79-85 Toyota trucks and 4runners
63.5" wide, (set up for coil springs) 90-97 FJ80 and FZJ80 Landcruisers
'86-95 IFS front end is about 58.5" wide
'93-98 T100 IFS front end is about 65" wide
Stock Toyota truck rear Axle:
55" wide, '79-85 trucks/4runners
58" wide, '86-95 trucks/4runners
60.75" wide, '95.5-up Tacomas/4runners
66.75" wide, '93-98 T100 trucks
Toyota FJ40 Land Cruiser:
front = ~56" wms - wms
rear = ~55.25" wms - wms
Toyota FJ60 and FJ62 Land Cruiser:
front: = ~58.75" wms - wms
rear: = ~58" wms - wms