Good news on the evap canister. I see that they had one with a vacuum pump, and one w/o, so I was going to try making it run on older style. If I do not need one that is better yet.
On your trans shifter, did you slide it back? On the one I have the cable is about a foot long, causing it to coil up almost against the bottom of exhaust manifold.
Where did you put the IAT probe? Inside the appendage on MAF?
I have been working on wiring One Page at aTime.
Hearing how fine yours is helps (so does getting one page of wiring correct).
I thought the cable was too long too. So I pulled a shifter cable from an 89 tracker and was trying to figure out how to adapt it when my brother said, "you should compare the length with the XL-7 cable." It turns out the XL-7 cable is only like 0.5" longer. So I bolted in the XL-7 shifter with cable attached and then got underneath and pushed the cable so it looped up the back of the engine and down to the mounting bracket. Fit is good.
I "installed" the IAT probe with zip-ties close to the air filter. A great temporary solution, in my opinion.
Just a thought:
When I wired it, I focused on one component at a time. So I started with the ECM, connected all the wires that I could, then onto the TCM, BCM, etc, etc. That way once the ECM was wired to the TCM, BCM, etc, and I moved on to the TCM, I could double check that the wire running from the TCM was connected properly to the ECM...does that make sense? Just my method. What ever works best for you. Most people have a different logical thought process.
I remember that I was jumping around a lot from one page to another. Whatever works right? I do feel for you though. Not having all the wiring and connectors would make it extra difficult.