Short answer: No.
The 1.3 intake manifold will not bolt up to the 16-valve head. It WILL bolt up to the 8-valve head.
Long answer: Got fabbing skills? You could fab an adapter plate of sorts to mate the 16-valve head to the 1.3 intake, I guess... I have never heard of anyone actually doing this.
Lots of folks (including myself) HAVE used a 1.3 head/intake/exhaust combo on a 1.6 block. The type of head that the block originally had is not of any importance.